LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127028-127047
0.015
11
8mer
82149-82160
0.013
0
9mer
1284-1291
0.009
1
8mer
132086-132111
0.009
1
7mer
74868-74878
0.008
9
7mer
69393-69412
0.008
1
8mer
192935-192954
0.007
Not Conserved
7mer
182164-182188
0.007
4
7mer
30351-30370
0.006
1
7mer
161390-161408
0.006
1
7mer
816-828
0.006
2
7mer
55507-55533
0.006
2
8mer
88874-88901
0.006
Not Conserved
9mer
171644-171661
0.006
1
8mer
31930-31948
0.005
Not Conserved
8mer
78613-78626
0.005
0
7mer
175560-175576
0.005
2
7mer
229072-229097
0.005
2
7mer
149616-149639
0.005
1
7mer
209667-209685
0.005
0
7mer
200727-200753
0.004
0
8mer
147240-147258
0.004
1
7mer
245591-245608
0.004
Not Conserved
7mer
166647-166664
0.004
1
7mer
123693-123715
0.004
6
7mer
59206-59217
0.004
2
7mer
184989-185009
0.004
1
7mer
129497-129517
0.004
1
7mer
61512-61527
0.004
3
7mer
58688-58700
0.004
1
7mer
189502-189521
0.004
2
8mer
10779-10799
0.003
4
8mer
61240-61267
0.003
0
9mer
65488-65507
0.003
0
6mer
216580-216605
0.003
8
7mer
58285-58303
0.003
2
7mer
116044-116054
0.003
1
8mer+wobble
66500-66519
0.003
1
7mer
7338-7356
0.003
1
9mer
136256-136275
0.003
1
7mer
176843-176860
0.003
5
6mer
108649-108674
0.003
5
7mer
65427-65446
0.003
1
6mer
725-750
0.003
3
6mer
50549-50572
0.002
5
6mer
222142-222151
0.002
3
6mer
123349-123365
0.002
6
6mer
157210-157223
0.002
3
6mer
13427-13447
0.002
0
6mer
58005-58030
0.002
5
6mer
99362-99379
0.002
4
6mer
2949-2974
0.002
3
6mer
20984-20999
0.002
2
8mer
179909-179925
0.002
1
6mer
244406-244429
0.002
1
6mer
99163-99187
0.002
1
6mer
56679-56696
0.002
4
8mer+mismatch
104401-104425
0.002
5
6mer
109885-109907
0.002
2
6mer
188266-188286
0.002
0
6mer
152245-152267
0.002
2
6mer
239012-239026
0.002
1
6mer
156941-156956
0.002
0
6mer
53501-53521
0.002
2
6mer
16869-16893
0.002
1
6mer
59750-59766
0.002
1
6mer
96301-96322
0.002
Not Conserved
6mer
153227-153243
0.002
0
6mer
28820-28846
0.002
1
6mer
183366-183380
0.002
3
6mer
42194-42208
0.002
1
6mer
206347-206374
0.002
Not Conserved
6mer
23995-24019
0.002
1
6mer
166118-166137
0.002
3
6mer
229884-229907
0.002
0
7mer
30655-30668
0.002
0
6mer
46908-46927
0.002
1
6mer
140798-140811
0.002
1
6mer
92782-92800
0.002
1
6mer
55808-55823
0.002
1
6mer
244929-244946
0.002
0
6mer
219574-219585
0.002
3
6mer
80391-80408
0.002
0
6mer
72435-72459
0.001
4
6mer
30841-30865
0.001
0
6mer
210536-210556
0.001
1
6mer
55067-55086
0.001
1
6mer
169855-169874
0.001
1
6mer
62428-62448
0.001
1
6mer
148205-148227
0.001
5
6mer
146156-146170
0.001
0
6mer
21480-21498
0.001
1
6mer
210804-210819
0.001
0
6mer
32222-32241
0.001
1
6mer
171930-171941
0.001
1
6mer
262949-262972
0.001
1
6mer
236763-236782
0.001
1
6mer
218670-218684
0.001
2
6mer
48668-48678
0.001
1
6mer
28499-28524
0.001
2
6mer
205565-205584
0.001
1
6mer
199919-199941
0.001
2
6mer
243587-243614
0.001
0
6mer
37207-37220
0.001
1
6mer
203666-203686
0.001
0
6mer
43461-43486
0.001
3
6mer
5846-5855
0.001
1
6mer
66177-66199
0.001
1
6mer
101163-101188
0.001
6
6mer
200946-200961
0.001
0
6mer
82745-82768
0.001
1
6mer
161922-161936
0.001
1
6mer
145876-145898
0.001
1
6mer
257449-257476
0.001
0
6mer
56139-56159
0.001
2
6mer
158797-158818
0.001
1
6mer
254720-254737
0.001
1
6mer
79514-79523
0.001
0
6mer
116367-116390
0.001
3
6mer
125177-125199
0.001
0
6mer
110702-110723
0.001
1
6mer
83137-83153
0.001
0
6mer
2693-2714
0.001
0
6mer
144434-144451
0.001
2
6mer
121741-121757
0.001
2
6mer
129597-129620
0.001
3
7mer
140855-140875
0.001
1
6mer
138297-138319
0.001
0
6mer
130137-130152
0.001
1
6mer
69632-69659
0.001
0
6mer
217677-217697
0.001
3
6mer
204758-204783
0.001
1
6mer
247406-247424
0.001
0
6mer
205670-205697
0.001
2
6mer
126225-126242
0.001
0
6mer
222297-222313
0.001
1
6mer
258431-258453
0.001
1
6mer
237247-237265
0.001
0
6mer
110761-110784
0.001
2
6mer
246244-246264
0.001
0
6mer
246493-246507
0.001
0
6mer
80443-80470
0.001
0
6mer
51436-51461
0.001
1
6mer
232935-232954
0.001
0
6mer
244469-244477
0.001
1
6mer
28844-28869
0.001
4
6mer
166665-166680
0.001
5
8mer+mismatch
206414-206431
0.001
1
6mer
125338-125355
0.001
Not Conserved
6mer
55810-55834
0.001
1
6mer
176916-176939
0.001
0
6mer
82225-82250
0.001
0
6mer
183386-183412
0.001
1
6mer
65518-65538
0.000
0
6mer
156954-156971
0.000
0
XLOC_007141
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-26
0.190
1
7mer
146-160
0.018
0
XLOC_012009
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025055
Biotype: transcript isomorph
Gene id: XLOC_012009
Gene Name: XLOC_012009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-200
0.178
0
AC006272.2
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596964
Biotype: lincRNA
Gene id: ENSG00000268316
Gene Name: AC006272.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-506
0.164
1
LINC00960
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1860-1875
0.144
1
6mer
1575-1595
0.010
1
6mer
1318-1340
0.003
0
XLOC_008328
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1347-1364
0.157
0
LINC01347
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435793
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-323
0.156
1
AC006548.28
hsa-miR-146a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26270-26295
0.011
1
7mer
5708-5725
0.009
5
7mer
27899-27922
0.006
1
8mer
43122-43138
0.005
1
8mer
4204-4220
0.005
0
7mer
689-708
0.005
Not Conserved
7mer
56723-56736
0.005
1
8mer
17693-17716
0.005
1
7mer
29400-29418
0.005
1
7mer
1601-1623
0.005
1
7mer
78505-78530
0.004
0
7mer
38982-39000
0.004
2
7mer
79990-80002
0.004
0
7mer
46316-46334
0.004
Not Conserved
7mer
52545-52556
0.003
Not Conserved
7mer
24047-24072
0.003
1
6mer
555-580
0.003
1
6mer
43740-43753
0.003
4
6mer
83548-83572
0.002
1
6mer
8122-8145
0.002
2
7mer
46813-46833
0.002
Not Conserved
7mer
19471-19490
0.002
1
6mer
67685-67692
0.002
Not Conserved
6mer
44640-44664
0.002
1
8mer+wobble
6267-6292
0.002
6
6mer
73473-73496
0.002
1
6mer
46059-46084
0.002
Not Conserved
6mer
35891-35913
0.002
1
6mer
16337-16363
0.002
1
6mer
70060-70080
0.002
0
6mer
4850-4870
0.002
3
8mer+wobble
55695-55714
0.002
0
6mer
75472-75489
0.002
0
6mer
63856-63868
0.001
0
6mer
33780-33804
0.001
1
6mer
32105-32125
0.001
1
6mer
45847-45864
0.001
Not Conserved
6mer
59145-59166
0.001
1
6mer
16832-16855
0.001
1
6mer
36347-36365
0.001
1
6mer
71088-71105
0.001
0
6mer
75710-75727
0.001
0
6mer
34451-34476
0.001
2
6mer
63134-63156
0.001
0
6mer
19045-19061
0.001
Not Conserved
6mer
68425-68444
0.001
Not Conserved
6mer
26603-26625
0.001
0
6mer
14939-14962
0.001
1
6mer
58955-58976
0.001
0
6mer
26527-26545
0.001
0
6mer
62968-62991
0.001
0
6mer
14172-14194
0.001
1
6mer
26580-26605
0.001
1
6mer
29381-29400
0.000
Not Conserved
6mer
75687-75712
0.000
0
XLOC_002258
hsa-miR-146a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2658-2685
0.050
1
8mer
1520-1533
0.031
1
7mer
2287-2302
0.015
0
6mer
2409-2420
0.013
1
6mer
2332-2355
0.009
1
6mer
2088-2115
0.006
0
XLOC_009511
hsa-miR-146a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020103
Biotype: transcript isomorph
Gene id: XLOC_009511
Gene Name: XLOC_009511
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
918-933
0.105
0
6mer
5-31
0.014
0
RP3-323A16.1
hsa-miR-146a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53638-53665
0.016
2
7mer
53808-53834
0.014
1
8mer
15864-15882
0.013
0
7mer
28937-28954
0.008
1
8mer
24751-24772
0.005
0
7mer
52879-52892
0.004
0
8mer
52890-52912
0.003
0
7mer
21136-21156
0.003
1
7mer
4051-4070
0.003
0
7mer
10528-10544
0.003
1
7mer
30022-30037
0.003
Not Conserved
6mer
130-149
0.003
1
6mer
22207-22232
0.002
1
6mer
51754-51777
0.002
2
6mer
35824-35847
0.002
2
6mer
49840-49864
0.002
1
6mer
46045-46067
0.002
1
6mer
39898-39924
0.002
Not Conserved
6mer
17878-17903
0.002
0
6mer
11638-11653
0.002
1
6mer
26265-26292
0.002
1
6mer
47672-47681
0.002
0
6mer
45352-45373
0.002
1
6mer
46674-46701
0.001
1
6mer
9830-9856
0.001
0
6mer
50638-50663
0.001
1
6mer
25038-25060
0.001
1
6mer
7394-7414
0.001
0
6mer
14090-14109
0.001
1
6mer
13865-13876
0.001
Not Conserved
6mer
5356-5368
0.001
0
6mer
12470-12491
0.001
2
6mer
37727-37752
0.001
1
6mer
30934-30957
0.001
0
6mer
41173-41186
0.001
1
6mer
44407-44425
0.001
1
6mer
47250-47267
0.001
0
6mer
2340-2359
0.001
1
6mer
31707-31730
0.001
0
6mer
43544-43562
0.001
0
6mer
11703-11715
0.001
Not Conserved
XLOC_011693
hsa-miR-146a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-453
0.094
0
6mer
1621-1640
0.012
0
6mer
1758-1784
0.005
Not Conserved
6mer
691-706
0.002
Not Conserved
KCNQ1OT1
hsa-miR-146a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90840-90860
0.017
0
7mer
43935-43962
0.012
7
7mer
53680-53702
0.009
4
9mer
87269-87288
0.005
2
8mer
81670-81687
0.003
1
7mer
14985-15009
0.003
1
8mer
54726-54744
0.003
1
7mer
43215-43226
0.003
0
7mer
85608-85629
0.003
0
6mer
91480-91504
0.003
0
6mer
91232-91257
0.002
1
7mer
26088-26108
0.002
0
6mer
70628-70649
0.002
0
6mer
22216-22236
0.002
1
6mer
67922-67926
0.002
1
6mer
33113-33139
0.002
0
8mer
91401-91419
0.002
Not Conserved
6mer
21647-21668
0.002
1
6mer
34789-34812
0.002
0
6mer
46429-46456
0.002
1
6mer
29315-29339
0.002
0
6mer
42946-42962
0.002
1
6mer
40302-40322
0.002
1
6mer
12426-12450
0.002
1
6mer
8514-8534
0.002
0
6mer
63407-63426
0.002
1
6mer
12669-12696
0.002
0
6mer
63155-63178
0.002
2
6mer
91375-91400
0.001
1
6mer
91258-91272
0.001
1
6mer
59158-59179
0.001
1
6mer
76745-76764
0.001
2
6mer
8760-8786
0.001
1
6mer
79423-79447
0.001
2
6mer
83341-83362
0.001
1
6mer
80132-80150
0.001
1
6mer
39237-39256
0.001
0
6mer
31389-31412
0.001
0
8mer+wobble
91289-91314
0.001
0
6mer
77446-77472
0.001
1
6mer
79263-79277
0.001
1
6mer
34685-34706
0.001
0
6mer
76393-76404
0.001
1
6mer
54945-54971
0.001
1
CTD-2501M5.1
hsa-miR-146a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519695
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-823
0.108
5
6mer
379-391
0.002
Not Conserved
XLOC_009783
hsa-miR-146a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1567-1579
0.055
0
7mer
1495-1509
0.040
0
6mer
1034-1048
0.010
0
8mer
631-652
0.004
Not Conserved
RP11-1084I9.1
hsa-miR-146a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557171
Biotype: lincRNA
Gene id: ENSG00000206187
Gene Name: RP11-1084I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-473
0.092
4
6mer
154-172
0.011
6
6mer
322-343
0.006
1
CTD-2501M5.1
hsa-miR-146a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524275
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-804
0.105
5
6mer
379-391
0.002
Not Conserved
RP11-210N13.4
hsa-miR-146a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621343
Biotype: lincRNA
Gene id: ENSG00000276981
Gene Name: RP11-210N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-264
0.104
1
LINC00665
hsa-miR-146a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2231-2245
0.085
1
8mer
1331-1349
0.013
0
AC090627.1
hsa-miR-146a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000421610
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
599-624
0.090
6
6mer
596-617
0.007
4
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